Sexually Transmitted Infections—A Closer Look at NIAID Research

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Sexually transmitted infections (STIs) are caused by bacteria, viruses, or parasites. STIs have a devastating impact on adults and infants and annually affect millions of people in the United States. Certain STIs can increase a person’s risk of developing cancer and increase the likelihood of acquiring or transmitting HIV. In addition, STIs can cause long-term health complications, especially in the reproductive and central nervous systems. In rare cases, they can lead to serious illness or death.

NIAID supports research across the spectrum from basic to clinical science to develop effective diagnostic, preventive and therapeutic approaches to STIs in alignment with the National STI Strategic Plan. In recognition of National STI Awareness Week, NIAID shares a snapshot of new projects and recent scientific advances in STI research.

Improving treatment for syphilis and trichomoniasis

New reports of syphilis and congenital syphilis are increasing at an alarming rate in the United States. Syphilis is caused by the bacterium Treponema pallidum. Benzathine penicillin G (BPG) is one of only a few antibiotics known to effectively treat syphilis. There is currently a shortage of BPG, and some people are allergic to penicillin antibiotics. In February 2024, NIAID convened a workshop with a wide range of experts on alternative therapies to BPG for the treatment of adult syphilis, neurosyphilis, and syphilis in pregnant persons and infants. The workshop addressed preclinical evaluation of candidate drugs, the potential need for studies on how candidate drugs are processed in the body during pregnancy, and how to approach clinical trials of treatment for congenital syphilis. This work is part of NIAID’s comprehensive portfolio of syphilis diagnosis, prevention, and treatment research.

Trichomoniasis is the most common parasitic STI, caused by Trichomonas vaginalis. Trichomoniasis can increase the risk of getting or spreading other STIs, including HIV. The parasite can also cause inflammation of the cervix and the urethra. T. vaginalis is treated with an antibiotic drug class called nitroimidazoles. The currently recommended nitroimidazole, called metronidazole, cures 84-98% of T. vaginalis cases but does have high rates of breakthrough infection. A new project led by Tulane University will examine a single dose of secnidazole, a medicine in the same drug class, as a more effective and cost-effective treatment option for women and men.

Developing a vaccine for herpes simplex virus 2

Herpes simplex virus 2 (HSV-2) is a common subtype of herpes simplex virus that is transmitted through sexual contact. The Centers for Disease Control and Prevention estimates that 18.6 million people aged 15 years and older United States live with HSV-2. In severe cases, HSV-2 may lead to life-threatening or long-term complications. There is no licensed preventive HSV-2 vaccine, and there is no cure. A new project led by the University of Pennsylvania seeks to define correlates of protection for HSV-2, meaning they intend to identify immune processes involved in preventing HSV-2 disease. They will do this by analyzing laboratory samples from animal studies of a promising preventive vaccine candidate that they developed with prior funding. That vaccine candidate is also now in an industry-sponsored early-stage clinical trial. The same project will expand on the HSV-2 targets in the preventive vaccine to develop a therapeutic vaccine concept to reduce recurrent outbreaks. This research responds to the scientific priorities in the NIH Strategic Plan for Herpes Simplex Virus Research.

Increasing fundamental knowledge of bacterial vaginosis 

Bacterial vaginosis (BV) results from an imbalance in the vaginal microbiome. BV can be caused by sexual activity, douches and menstrual products. BV can increase women’s biological susceptibility to HIV and other STIs and can cause premature birth or low birthweight if untreated in pregnant people. In a recent publication, NIAID-supported researchers, led by researchers at the University of Washington and University of California San Diego, shared findings on how damage to the vaginal skin barrier occurs during bacterial vaginosis. Those skin barrier cells, called epithelial cells, are covered in carbohydrate molecules called glycans. The research team found that people with BV had damaged glycans on their vaginal epithelial cells. They suggested that future work should examine the relationship between treatment and restoration of normal glycans. If an association is detected, it could help healthcare providers monitor for successful treatment outcomes to reduce the likelihood that BV will return after a course of treatment. The findings were published in Science Translational Medicine.

These activities are among the research investments in NIAID’s STI portfolio. For more information on STIs, please visit:

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World TB Day 2024 – Yes! We Can End TB!

In observance of World Tuberculosis Day (Sunday, March 24), NIAID joins our partners in reaffirming our commitment to ending the tuberculosis (TB) pandemic while honoring the lives lost to TB disease.

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Scientists Discover 18 New Species of Gut Microbes in Search for Origins of Antibiotic Resistance

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Doxy-PEP, HIV Vaccines and Community-Engaged Research: Discussions with Carl Dieffenbach and LaRon Nelson at CROI 2024 (VIDEO)

NIAID Now |

This blog is adapted and cross-posted from HIV.gov.

During the first full day of presentations at the 2024 Conference on Retroviruses and Opportunistic Infections (CROI), HIV.gov spoke with Carl Dieffenbach, Ph.D., director of NIAID’s Division of AIDS, about research presented on Doxy-PEP for sexually transmitted infections (STIs) and HIV vaccines. He spoke with Louis Shackelford of the HIV Vaccine Trials NetworkWatch their conversation.

Louis also spoke with LaRon Nelson, Ph.D., R.N., F.N.P., F.N.A.P., F.N.Y.A.M., F.A.A., about community-engaged research, HIV prevention at CROI, and a new study (HPTN 096) he is leading to reduce HIV rates among Black men who have sex with men (inclusive of cisgender and transgender men) in the southern United States. Dr. Nelson is a professor and the associate dean at the Yale School of Nursing. Watch their conversation.

Insights from Doxy-PEP Use in Real World Settings

At last year’s CROI, researchers presented results from an NIH-supported study on using a preventive dose of the antibiotic doxycycline as post-exposure prophylaxis within 72 hours after condomless sex to prevent bacterial STIs, an approach that has become known as Doxy-PEP. (View last year’s Doxy-PEP discussion with Dr. Dieffenbach.) Here at CROI 2024, Dr. Annie Luetkemeyer of the University of California, San Francisco, shared additional findings from the open-label extension of that original study, which found sustained reduction of bacterial STIs among men who have sex with men and transgender women living with HIV or on PrEP in Seattle and San Francisco. The San Francisco AIDS Foundation (SFAF) was one of the first organizations in the United States to roll out Doxy-PEP, beginning in late 2022 when it was offered to all active PrEP clients at their visits at the Magnet clinic. SFAF medical director Dr. Hyman Scott reported that there was high uptake among clients and that bacterial STIs decreased by nearly 60% in less than a year at SFAF’s clinic. The decline was highest for syphilis (78%) and chlamydia (67%).

The San Francisco Department of Public Health (SFDPH) presented the first findings to measure the effect of Doxy-PEP at the population level. Their analysis, presented by epidemiologist Madeline Sankaran, showed a substantial and sustained decline in the number of chlamydia and early syphilis infections in San Francisco among men who have sex with men and transgender women over the 13 months after the Department released guidelines for the use of Doxy-PEP. As in the other studies presented, SFDPH did not see corresponding significant declines in gonorrhea. Doxy-PEP is not recommended for cis-gender women because there is not yet evidence to suggest it is effective for them.

HIV Vaccine Trials Continue

Dr. Dieffenbach also discussed ongoing research to find a vaccine to prevent HIV, the topic of several presentations at the conference so far. Since there are a number of Phase I HIV vaccine trials currently underway, he and Louis spoke about what those smaller trials do. Then they discussed what some of the HIV vaccine trials currently underway are exploring.

Other Studies of Interest Presented on Monday

Some of the other studies presented centered on broadly neutralizing antibodies (bNAbs), including bNAbs as part of HIV therapy and how different HIV variants can affect bNAb efficacy as a treatment method. A new analysis from the pivotal HVTN 083 study of long-acting PrEP with cabotegravir found no significant risk of hypertension in people using the method, which had been a concern in some previous clinical studies of the same class of antiretroviral drugs.

Community-Engaged Research

The importance and significant benefits of involving community in all aspects of HIV research was the first topic Dr. Nelson and Louis discussed. “If we don’t have community voices or engaged communities, we aren’t going to be asking the right questions or designing the studies in the best ways that will produce the outcome that we need, and we won’t end up with answers that are as relevant as they could be,” Dr. Nelson observed. He pointed to the dapivirine vaginal ring as an example of better outcomes because communities were involved in research. He said he hopes that community engagement in research continues to become more and more common, but it requires that researchers be willing to listen and, when needed, change their plans based on what they hear from community.

HIV Prevention Research at CROI

Dr. Nelson highlighted some of the HIV prevention topics at CROI that have caught his attention, such as increasing equitable use of long-acting injectable forms of HIV PrEP and treatment among different populations and in different countries. Other discussions of interest have included early studies on potentially very long-acting forms of HIV PrEP and exploration of possible dual prevention tools that would provide users with both HIV PrEP and contraception.

HPTN 096 Study

Finally, Dr. Nelson discussed an example of community-informed research that will soon be underway: the NIH-supported study through the HIV Prevention Trials Network (HPTN) known as HPTN 096. It aims to reduce HIV rates among Black men who have sex with men in the southern United States using a strategy developed based on what communities have told Dr. Nelson and colleagues is needed to do so. As a result, the study includes a package of four interventions which simultaneously address social, structural, institutional, and behavioral barriers to HIV prevention and care. HPTN 096 will soon launch in Atlanta, south Florida, Montgomery, Memphis, and Dallas.

More HIV Research Updates to Follow on HIV.gov

HIV.gov will be sharing additional video interviews from CROI 2024 with Dr. Dieffenbach, CDC’s Dr. Jono Mermin and Dr. Robyn Neblett Fanfair, and others. You can find all of them on HIV.gov’s social media channels and recapped here on the blog.

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Big Opportunity to Join Centers for Excellence in Translational Research

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Since 2014, NIAID’s Centers of Excellence for Translational Research (CETR) have advanced discovery and preclinical development of new or improved medical countermeasures for emerging and re-emerging infectious diseases. 

Through the new notice of funding opportunity (NOFO) Centers of Excellence for Translational Research (CETR) (U19, Clinical Trial Not Allowed), NIAID seeks applications from single institutions or consortia of institutions ready to generate, validate, and advance medical countermeasures (MCMs) against a select list of bacteria or fungi with known or emerging resistance to current therapies.  

Each center will be organized around a theme focused on preclinical development or use of MCMs or technologies that target specified pathogens to translate research results into product development. Successful applicants must propose three or more research projects plus an administrative core, and may propose up to three scientific cores.

Targeted Pathogens 

To start, know that your application must prioritize one or more of the antimicrobial resistant (AMR) pathogens below.  

Bacteria 

  • Acinetobacter baumannii 
  • Campylobacter spp. 
  • Clostridioides difficile 
  • Enterobacter spp. 
  • Enterococcus spp. 
  • Escherichia coli 
  • Klebsiella pneumoniae 
  • Neisseria gonorrhoeae 
  • Non-tuberculous mycobacteria (NTM) 
  • Nontyphoidal Salmonella spp. 
  • Pseudomonas aeruginosa 
  • Salmonella enterica serovar Typhi 
  • Shigella spp. 
  • Staphylococcus aureus 
  • Streptococcus pneumoniae 

Fungi 

  • Aspergillus fumigatus 
  • Candida spp., in particular C. auris 

Though experiments with nonvirulent forms of these pathogens are allowed, you must focus on the virulent form. 

Research Directions 

The CETR program aims to develop MCMs that are effective against a variety of pathogens and toxins, technologies that can be widely applied to improve classes of products, and platforms that can reduce the time and cost of creating new products. To that end, your proposed research projects should focus on therapeutics, immunotherapeutics, vaccines, vaccine technologies, or in vitro diagnostics for the targeted pathogens. 

Therapeutics 

For AMR bacteria, applications should focus on therapeutic discovery in the lead optimization phase with existing lead candidates to support progression through pivotal nonclinical studies required for entry into clinical trials. For AMR fungal pathogens listed above, earlier lead discovery efforts are of interest.  

Therapeutic candidates of interest include small molecule, biotherapeutic, monoclonal antibody, or phage candidates to be used as monotherapy, in combination with other drugs, or as adjunctive therapy. Candidates with broad-spectrum activity are encouraged, though you may also pursue therapeutic candidates with a narrow spectrum that target high-priority pathogens for which no standard clinical treatment exists or for which drug resistance poses a significant public health concern. 

Vaccines 

Vaccines provide an important tool to combat infectious disease, yet the preclinical and clinical pipelines for vaccine candidates against the bacterial and fungal pathogens remain limited. This NOFO will support both antigen identification and development of vaccines (including immunoprophylactics) against one or more of the AMR pathogens. Monovalent, multivalent, or broadly protective vaccines may also be considered. 

Related identification and validation of antigen targets and immunogen design should focus on systems vaccinology approaches and technologies including multi-omics approaches, structural biology, and computational modeling and prediction that elucidate host responses. 

Diagnostics 

This initiative will support coupled development of integrated, sensitive, culture-independent, pathogen identification testing systems with a phenotypic antibiotic or antifungal susceptibility testing system. 

All diagnostics applications should be supported by sufficient proof-of-concept data to establish feasibility and reproducibility and should eventually exceed performance specifications of currently available instruments and systems for reduced turnaround time, breadth of antibiotic or anti-fungal test panels, and test performance. Additionally, applications should adequately describe design and development planning of instrument systems (e.g., assay and hardware prototype development, consumables development, sample preparation, sample processing, system integration, software development, manufacturing, and diagnostic validation). 

Cores for Support 

You must propose an Administrative Core, which will manage, coordinate, and supervise all Center activities. The Administrative Core will include a Scientific Advisory Board (SAB) that will participate in the development and management of the CETR and corresponding activities. Do not propose or contact any SAB members before an award is made (i.e., when applying). 

Optionally, you can create up to three scientific cores, which would provide resources or facilities that are essential for the activities of two or more of your research projects. Scientific Cores are intended to only serve the needs of Center project researchers and they may not conduct research independent of the Center’s research projects. 

Nonresponsive Elements 

NIAID will consider applications that contain the research projects including the following to be nonresponsive and not review them: 

  • Therapeutic projects targeting AMR bacterial pathogens focused on basic discovery (e.g., target identification) 
  • Viral pathogens 
  • Bacterial strains: Mycobacterium tuberculosis, Group A/B Streptococcus, Bordetella pertussis,and Mycoplasma genitalium 
  • Clinical trials (all phases) 
  • Solely focused upon repurposing an FDA-approved drug 
  • Development of surveillance or detection technologies 
  • Activities other than translational activities towards the development of therapeutic, vaccine, or diagnostic countermeasures 

Also, take note: Your application must include a “Product Development Strategy” attachment, and within that attachment you must describe Milestones and Product Development Plans. Only applications solely proposing early translational studies in fungal pathogens are exempt from this requirement. 

Tie It All Together 

Recall that your CETR application must be arranged around a central theme. The NOFO provides examples, such as: 

  • Developing new approaches for a known pathogen target (e.g., gyrase, cell wall) to include broad-spectrum therapeutics with extended activity against more than one AMR pathogen. 
  • Developing a monoclonal antibody, phage, or other technology approach to counter pathogen resistance. 
  • Developing faster phenotypic antibacterial susceptibility test (AST) characterization for better antibiotic stewardship. 

Find additional examples of possible themes in the NOFO, as well as more thorough descriptions of translational research activities. 

Administrative Details 

Application budgets are not expected to exceed $5 million in annual direct costs and must reflect the actual research needs. The scope of the proposed project should determine the project period. The maximum project period is 5 years. 

This NOFO has a single application due date: April 29, 2024, at 5 p.m. local time of the applicant organization. 

Direct scientific or research-related questions to Dr. Candace Kerr at candace.kerr@nih.gov or 301-761-6257. For review-related inquiries, contact Dr. Caitlin Brennan at caitlin.brennan2@nih.gov  or 301-761-7792 or Dr. Lindsey Pujanandez at lindsey.pujanandez@nih.gov or 301-761-7830.

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Emory Team Finds Promising Approach to Treating Multi-Drug Resistant Microbes in Human Gut

NIH Investigates Multidrug-Resistant Bacterium Emerging in Community Settings

New “hypervirulent” strains of the bacterium Klebsiella pneumoniae have emerged in healthy people in community settings, prompting a National Institutes of Health research group to investigate how the human immune system defends against infection.

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Diverse Team Including UMass Amherst Biostatistician Receives $13.7 Million Grant to Address Antibiotic Resistance in Nursing Homes

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